Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2542 family protein | BEN53_RS13820 | Not Available | Positive | 2687608 - 2687847 | 9298.62 |
| nad-dependent dihydropyrimidine dehydrogenase subunit pret | BEN53_RS13825 | Not Available | Positive | 2688041 - 2689279 | 44239.9 |
| nad-dependent dihydropyrimidine dehydrogenase subunit prea | BEN53_RS13830 | Not Available | Positive | 2689273 - 2690508 | 45047.3 |
| galactose/methyl galactoside abc transporter permease mglc | BEN53_RS13835 | Not Available | Negative | 2690579 - 2691589 | 35580.4 |
| galactose/methyl galactoside abc transporter atp-binding protein mgla | BEN53_RS13840 | Not Available | Negative | 2691605 - 2693125 | 56391.8 |
| galactose/glucose abc transporter substrate-binding protein mglb | BEN53_RS13845 | Not Available | Negative | 2693186 - 2694184 | 35714.5 |
| hth-type transcriptional regulator gals | BEN53_RS13850 | Not Available | Negative | 2694464 - 2695504 | 37374.1 |
| duf418 domain-containing protein yeib | BEN53_RS13860 | Not Available | Negative | 2695646 - 2696803 | 43377.1 |
| gtp cyclohydrolase i fole | BEN53_RS13865 | Not Available | Negative | 2696820 - 2697488 | 24832.1 |
| s-formylglutathione hydrolase | BEN53_RS13880 | Not Available | Positive | 2697746 - 2698582 | 31246.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




