Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ycar | BEN53_RS13565 | Not Available | Negative | 2626156 - 2626338 | 6855.35 |
| crosslink repair dna glycosylase ycaq | BEN53_RS13570 | Not Available | Negative | 2626390 - 2627622 | 47666.5 |
| tetraacyldisaccharide 4'-kinase | BEN53_RS13575 | Not Available | Negative | 2627659 - 2628645 | 35569.2 |
| lipid a abc transporter atp-binding protein/permease msba | BEN53_RS13580 | Not Available | Negative | 2628642 - 2630390 | 64464.6 |
| comec family protein | BEN53_RS13585 | Not Available | Negative | 2630427 - 2632691 | 84541.0 |
| integration host factor subunit beta | BEN53_RS13590 | Not Available | Negative | 2632897 - 2633181 | 10651.8 |
| 30s ribosomal protein s1 | BEN53_RS13595 | Not Available | Negative | 2633341 - 2635014 | 61161.5 |
| (d)cmp kinase | BEN53_RS13600 | Not Available | Negative | 2635125 - 2635808 | 24747.8 |
| metallopeptidase ycal | BEN53_RS13605 | Not Available | Negative | 2635981 - 2636745 | 26738.7 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | BEN53_RS13610 | Not Available | Negative | 2636914 - 2638197 | 46069.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




