Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 6-n-hydroxylaminopurine resistance protein ycbx | BEN53_RS13400 | Not Available | Positive | 2589601 - 2590710 | 40565.5 |
| cell division protein zapc | BEN53_RS13405 | Not Available | Negative | 2590707 - 2591249 | 20589.9 |
| quinone-dependent dihydroorotate dehydrogenase | BEN53_RS13410 | Not Available | Negative | 2591423 - 2592433 | 36791.7 |
| fimbrial chaperone | BEN53_RS13415 | Not Available | Negative | 2592544 - 2593281 | 27047.7 |
| fimbrial protein | BEN53_RS13420 | Not Available | Negative | 2593247 - 2593762 | 18355.8 |
| fimbrial protein | BEN53_RS13425 | Not Available | Negative | 2593770 - 2594312 | 18942.7 |
| fimbrial protein | BEN53_RS13430 | Not Available | Negative | 2594324 - 2595394 | 37947.6 |
| fimbrial biogenesis usher protein | BEN53_RS13435 | Not Available | Negative | 2595385 - 2597985 | 95087.8 |
| molecular chaperone | BEN53_RS13440 | Not Available | Negative | 2598010 - 2598711 | 25484.0 |
| fimbrial protein | BEN53_RS13445 | Not Available | Negative | 2598792 - 2599331 | 18663.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




