Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s rrna (cytosine(1962)-c(5))-methyltransferase rlmi | BEN53_RS13295 | Not Available | Positive | 2567365 - 2568555 | 44383.5 |
| heat shock protein hspq | BEN53_RS13300 | Not Available | Positive | 2568613 - 2568930 | 11779.9 |
| coa-binding protein | BEN53_RS13305 | Not Available | Negative | 2568975 - 2569388 | 14702.0 |
| duf2057 family protein | BEN53_RS13310 | Not Available | Positive | 2569561 - 2570223 | 24595.5 |
| methylglyoxal synthase | BEN53_RS13315 | Not Available | Positive | 2570319 - 2570777 | 16919.6 |
| dna helicase iv | BEN53_RS13320 | Not Available | Negative | 2570809 - 2572863 | 77947.5 |
| yccf domain-containing protein | BEN53_RS13325 | Not Available | Positive | 2572986 - 2573432 | 16276.3 |
| yccs family putative transporter | BEN53_RS13330 | Not Available | Positive | 2573442 - 2575604 | 82006.8 |
| crp-s regulon transcriptional coactivator sxy | BEN53_RS13335 | Not Available | Negative | 2575567 - 2576196 | 24162.4 |
| sos-induced cell division inhibitor sula | BEN53_RS13340 | Not Available | Positive | 2576414 - 2576923 | 18786.5 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




