Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hydrogenase expression/formation protein | BEN53_RS13240 | Not Available | Negative | 2559727 - 2560584 | 31446.5 |
| hydrogenase-1 operon protein hyae | BEN53_RS13245 | Not Available | Negative | 2560581 - 2560979 | 14904.6 |
| hydrogenase 1 maturation protease | BEN53_RS13250 | Not Available | Negative | 2560976 - 2561563 | 21563.6 |
| ni/fe-hydrogenase b-type cytochrome subunit | BEN53_RS13255 | Not Available | Negative | 2561560 - 2562267 | 27612.9 |
| ni/fe-hydrogenase large subunit | BEN53_RS13260 | Not Available | Negative | 2562286 - 2564079 | 66257.0 |
| hydrogenase 1 small subunit | BEN53_RS13265 | Not Available | Negative | 2564076 - 2565194 | 40683.6 |
| Trna-ser | Not Available | Not Available | Positive | 2565621 - 2565708 | Not Available |
| ftsh protease modulator ycca | BEN53_RS13280 | Not Available | Positive | 2565915 - 2566574 | 23364.3 |
| sulfurtransferase tuse | BEN53_RS13285 | Not Available | Positive | 2566666 - 2566995 | 12395.0 |
| acylphosphatase | BEN53_RS13290 | Not Available | Negative | 2566992 - 2567270 | 10272.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




