Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4fe-4s binding protein | BEN53_RS13190 | Not Available | Positive | 2553019 - 2554092 | 40098.4 |
| gnsa/gnsb family addiction module toxin | BEN53_RS13195 | Not Available | Negative | 2554141 - 2554314 | 6575.99 |
| protein ymce | BEN53_RS13200 | Not Available | Negative | 2554304 - 2554534 | 8687.53 |
| cold-shock protein | BEN53_RS13205 | Not Available | Negative | 2554509 - 2554697 | 7104.55 |
| cold shock protein cspg | BEN53_RS13210 | Not Available | Negative | 2554708 - 2554920 | 7781.14 |
| cold shock-like protein csph | BEN53_RS13215 | Not Available | Positive | 2555206 - 2555418 | 7720.48 |
| bifunctional acid phosphatase/4-phytase | BEN53_RS13220 | Not Available | Negative | 2555406 - 2556716 | 47553.1 |
| cytochrome bd-ii oxidase subunit cbdx | BEN53_RS13225 | Not Available | Negative | 2556796 - 2556888 | 3597.68 |
| cytochrome d ubiquinol oxidase subunit ii | BEN53_RS13230 | Not Available | Negative | 2556901 - 2558037 | 42427.3 |
| cytochrome bd-ii oxidase subunit 1 | BEN53_RS13235 | Not Available | Negative | 2558049 - 2559593 | 57996.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




