Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pyrimidine utilization protein a | BEN53_RS13085 | Not Available | Positive | 2532603 - 2533694 | 39917.4 |
| peroxyureidoacrylate/ureidoacrylate amidohydrolase rutb | BEN53_RS13090 | Not Available | Positive | 2533694 - 2534386 | 25211.0 |
| 3-aminoacrylate deaminase | BEN53_RS13095 | Not Available | Positive | 2534398 - 2534784 | 13763.6 |
| pyrimidine utilization protein d | BEN53_RS13100 | Not Available | Positive | 2534792 - 2535592 | 28958.8 |
| malonic semialdehyde reductase | BEN53_RS13105 | Not Available | Positive | 2535602 - 2536192 | 21582.5 |
| nadh-dependent fmn reductase rutf | BEN53_RS13110 | Not Available | Positive | 2536203 - 2536697 | 17730.2 |
| pyrimidine utilization transport protein g | BEN53_RS13115 | Not Available | Positive | 2536718 - 2538046 | 45602.4 |
| general stress protein | BEN53_RS13120 | Not Available | Negative | 2538129 - 2538302 | 5883.55 |
| nad(p)h:quinone oxidoreductase | BEN53_RS13130 | Not Available | Positive | 2538675 - 2539271 | 20846.8 |
| yccj family protein | BEN53_RS13135 | Not Available | Positive | 2539292 - 2539519 | 8524.89 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




