Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| poly-beta-1,6-n-acetyl-d-glucosamine synthase | BEN53_RS13015 | Not Available | Positive | 2518600 - 2519925 | 50706.6 |
| poly-beta-1,6-n-acetyl-d-glucosamine biosynthesis protein pgad | BEN53_RS13020 | Not Available | Positive | 2519927 - 2520340 | 16150.8 |
| phosphate starvation-inducible protein phoh | BEN53_RS13025 | Not Available | Negative | 2520390 - 2521178 | 29351.5 |
| iron uptake transporter deferrochelatase/peroxidase subunit | BEN53_RS13035 | Not Available | Negative | 2521786 - 2523057 | 46637.7 |
| iron uptake system protein efeo | BEN53_RS13040 | Not Available | Negative | 2523063 - 2524190 | 41185.9 |
| iron uptake transporter permease efeu | BEN53_RS13045 | Not Available | Negative | 2524248 - 2525078 | 30345.7 |
| sodium/proline symporter putp | BEN53_RS13060 | Not Available | Negative | 2525744 - 2527252 | 54347.3 |
| hypothetical protein | BEN53_RS13070 | Not Available | Negative | 2527411 - 2527620 | 7779.91 |
| trifunctional transcriptional regulator/proline dehydrogenase/l-glutamate gamma-semialdehyde dehydrogenase | BEN53_RS13075 | Not Available | Positive | 2527675 - 2531637 | 143734.0 |
| hth-type transcriptional regulator rutr | BEN53_RS13080 | Not Available | Negative | 2531677 - 2532315 | 23688.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




