Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| curli production assembly/transport protein csgf | BEN53_RS12965 | Not Available | Positive | 2507532 - 2507948 | 15072.7 |
| curli production assembly/transport protein csgg | BEN53_RS12970 | Not Available | Positive | 2507975 - 2508808 | 30559.0 |
| duf1097 domain-containing protein | BEN53_RS12975 | Not Available | Negative | 2508873 - 2509364 | 17104.5 |
| molecular chaperone ycdy | BEN53_RS12980 | Not Available | Negative | 2509466 - 2510020 | 20785.5 |
| zinc-binding phosphatase | BEN53_RS12985 | Not Available | Negative | 2510044 - 2510781 | 26865.0 |
| glyoxylate/hydroxypyruvate reductase ghra | BEN53_RS12990 | Not Available | Negative | 2510836 - 2511774 | 35318.4 |
| Trna-ser | Not Available | Not Available | Positive | 2512008 - 2512095 | Not Available |
| ggdef domain-containing protein | BEN53_RS13000 | Not Available | Negative | 2512200 - 2513567 | 52002.9 |
| poly-beta-1,6 n-acetyl-d-glucosamine export porin pgaa | BEN53_RS13005 | Not Available | Positive | 2514157 - 2516580 | 92298.1 |
| poly-beta-1,6-n-acetyl-d-glucosamine n-deacetylase pgab | BEN53_RS13010 | Not Available | Positive | 2516589 - 2518607 | 77434.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




