Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| n-methyl-l-tryptophan oxidase | BEN53_RS12850 | Not Available | Positive | 2489073 - 2490191 | 40904.2 |
| yceo family protein | BEN53_RS12855 | Not Available | Positive | 2490239 - 2490352 | 4719.1 |
| cytochrome b | BEN53_RS12860 | Not Available | Positive | 2490613 - 2491179 | 20692.5 |
| ycei family protein | BEN53_RS12865 | Not Available | Positive | 2491183 - 2491758 | 20913.6 |
| rhodanese-related sulfurtransferase | BEN53_RS12870 | Not Available | Negative | 2491800 - 2492852 | 39741.4 |
| kdo(2)-lipid iv(a) lauroyltransferase | BEN53_RS12875 | Not Available | Positive | 2493077 - 2493997 | 35390.9 |
| multidrug efflux mfs transporter mdtg | BEN53_RS12880 | Not Available | Positive | 2494169 - 2495395 | 43884.1 |
| mysb family protein | BEN53_RS12885 | Not Available | Positive | 2495478 - 2495852 | 14258.9 |
| ycek/yidq family lipoprotein | BEN53_RS12890 | Not Available | Negative | 2495853 - 2496080 | 8443.31 |
| glucans biosynthesis glucosyltransferase mdoh | BEN53_RS12895 | Not Available | Negative | 2496253 - 2498796 | 96928.7 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




