Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| murein biosynthesis integral membrane protein murj | BEN53_RS12795 | Not Available | Negative | 2480282 - 2481817 | 55254.8 |
| gfo/idh/moca family protein | BEN53_RS12800 | Not Available | Negative | 2481927 - 2482850 | 33711.4 |
| yceh family protein | BEN53_RS12805 | Not Available | Negative | 2482852 - 2483499 | 24181.8 |
| ribosomal protein s5-alanine n-acetyltransferase | BEN53_RS12810 | Not Available | Negative | 2483510 - 2484094 | 22689.1 |
| multidrug efflux mfs transporter mdth | BEN53_RS12815 | Not Available | Positive | 2484330 - 2485538 | 44412.0 |
| glutaredoxin 2 | BEN53_RS12820 | Not Available | Positive | 2485602 - 2486249 | 24351.6 |
| lipoprotein | BEN53_RS12825 | Not Available | Positive | 2486383 - 2486943 | 20501.0 |
| dihydroorotase | BEN53_RS12830 | Not Available | Positive | 2487049 - 2488095 | 38829.6 |
| dna damage-inducible protein i | BEN53_RS12835 | Not Available | Positive | 2488169 - 2488414 | 8949.43 |
| biofilm formation regulator bsss | BEN53_RS12845 | Not Available | Positive | 2488704 - 2488958 | 9664.31 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




