Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase ycfp | BEN53_RS12590 | Not Available | Negative | 2443192 - 2443734 | 21326.5 |
| beta-n-acetylhexosaminidase | BEN53_RS12595 | Not Available | Negative | 2443757 - 2444782 | 37573.9 |
| thiamine kinase | BEN53_RS12600 | Not Available | Negative | 2444793 - 2445617 | 32452.1 |
| penicillin-binding protein activator lpob | BEN53_RS12605 | Not Available | Negative | 2445598 - 2446239 | 22517.0 |
| ycfl family protein | BEN53_RS12610 | Not Available | Negative | 2446253 - 2446630 | 13923.8 |
| purine nucleoside phosphoramidase | BEN53_RS12615 | Not Available | Negative | 2446633 - 2446992 | 13272.2 |
| ferric-rhodotorulic acid/ferric-coprogen receptor fhue | BEN53_RS12620 | Not Available | Positive | 2447326 - 2449515 | 81256.1 |
| pts glucose transporter subunit iibc | BEN53_RS12625 | Not Available | Negative | 2449575 - 2451008 | 50679.5 |
| metal-dependent hydrolase | BEN53_RS12630 | Not Available | Negative | 2451303 - 2452100 | 29810.4 |
| dna polymerase iii subunit delta' | BEN53_RS12635 | Not Available | Negative | 2452111 - 2453115 | 36993.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




