Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipoprotein-releasing abc transporter permease subunit lole | BEN53_RS12535 | Not Available | Negative | 2430297 - 2431541 | 45338.0 |
| lipoprotein-releasing abc transporter atp-binding protein lold | BEN53_RS12540 | Not Available | Negative | 2431541 - 2432242 | 25453.9 |
| lipoprotein-releasing abc transporter permease subunit lolc | BEN53_RS12545 | Not Available | Negative | 2432235 - 2433434 | 43266.5 |
| acyltransferase family protein | BEN53_RS12550 | Not Available | Positive | 2433695 - 2434768 | 40853.9 |
| transcription-repair coupling factor | BEN53_RS12555 | Not Available | Positive | 2434896 - 2438342 | 130067.0 |
| l,d-transpeptidase ldtc | BEN53_RS12560 | Not Available | Positive | 2438485 - 2439447 | 34621.9 |
| multiple stress resistance protein bhsa | BEN53_RS12565 | Not Available | Negative | 2439530 - 2439787 | 8843.61 |
| tetr family copper-responsive transcriptional repressor comr | BEN53_RS12570 | Not Available | Positive | 2440028 - 2440660 | 23480.1 |
| glycine zipper 2tm domain-containing protein | BEN53_RS12575 | Not Available | Negative | 2440722 - 2441261 | 18863.6 |
| nadh-quinone dehydrogenase | BEN53_RS12585 | Not Available | Negative | 2441488 - 2442792 | 47361.6 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




