Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cell division-associated protein ymgf | BEN53_RS12390 | Not Available | Negative | 2404861 - 2405079 | 8237.33 |
| cyclic diguanylate phosphodiesterase | BEN53_RS12395 | Not Available | Negative | 2405211 - 2406734 | 56772.0 |
| protein ymgc | BEN53_RS12400 | Not Available | Negative | 2407066 - 2407314 | 9693.81 |
| biofilm/acid-resistance regulator arir | BEN53_RS12405 | Not Available | Negative | 2407427 - 2407693 | 9707.59 |
| hypothetical protein | BEN53_RS12410 | Not Available | Negative | 2407722 - 2407994 | 10329.5 |
| regulatory protein ycgz | BEN53_RS12415 | Not Available | Negative | 2408037 - 2408273 | 8674.38 |
| blue light-responsive regulator bluf | BEN53_RS12420 | Not Available | Positive | 2408587 - 2409798 | 45316.6 |
| dna-binding transcriptional repressor blur | BEN53_RS12425 | Not Available | Positive | 2410003 - 2410734 | 28236.1 |
| duf1398 domain-containing protein | BEN53_RS12430 | Not Available | Positive | 2410955 - 2411359 | 15828.0 |
| hypothetical protein | BEN53_RS27165 | Not Available | Positive | 2411412 - 2411522 | 4359.51 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




