Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| disulfide bond formation protein dsbb | BEN53_RS12275 | Not Available | Positive | 2389756 - 2390286 | 20143.3 |
| dna polymerase v catalytic protein | BEN53_RS12280 | Not Available | Negative | 2390332 - 2391600 | 47688.4 |
| translesion error-prone dna polymerase v autoproteolytic subunit | BEN53_RS12285 | Not Available | Negative | 2391600 - 2392019 | 15064.2 |
| hemolysin hlye | BEN53_RS12290 | Not Available | Positive | 2392391 - 2393302 | 33733.2 |
| ycgn family cysteine cluster protein | BEN53_RS12295 | Not Available | Negative | 2393509 - 2393955 | 17329.5 |
| fumarylacetoacetate hydrolase family protein | BEN53_RS12300 | Not Available | Negative | 2394047 - 2394706 | 23682.4 |
| ycgl domain-containing protein | BEN53_RS12305 | Not Available | Negative | 2394778 - 2395071 | 11247.7 |
| g-type lysoyme inhibitor plig | BEN53_RS12315 | Not Available | Positive | 2395313 - 2395714 | 14807.5 |
| ycgj family protein | BEN53_RS12320 | Not Available | Negative | 2395834 - 2396202 | 13397.1 |
| septum site-determining protein minc | BEN53_RS12330 | Not Available | Positive | 2396722 - 2397417 | 24746.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




