Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oligopeptide abc transporter permease oppb | BEN53_RS11900 | Not Available | Negative | 2315451 - 2316371 | 33445.3 |
| oligopeptide abc transporter substrate-binding protein oppa | BEN53_RS11905 | Not Available | Negative | 2316457 - 2318088 | 60951.1 |
| hypothetical protein | BEN53_RS27150 | Not Available | Positive | 2318507 - 2318668 | 5850.83 |
| naat family transporter yche | BEN53_RS11915 | Not Available | Negative | 2318826 - 2319473 | 23488.7 |
| hypothetical protein | BEN53_RS27455 | Not Available | Negative | 2319504 - 2319557 | 1910.48 |
| bifunctional acetaldehyde-coa/alcohol dehydrogenase | BEN53_RS11920 | Not Available | Positive | 2319950 - 2322625 | 96106.5 |
| hypothetical protein | BEN53_RS11925 | Not Available | Negative | 2322680 - 2324026 | 50966.5 |
| thymidine kinase | BEN53_RS11930 | Not Available | Negative | 2324366 - 2324983 | 23400.8 |
| histone-like nucleoid-structuring protein h-ns | BEN53_RS11935 | Not Available | Positive | 2325587 - 2326000 | 15540.5 |
| utp--glucose-1-phosphate uridylyltransferase galu | BEN53_RS11940 | Not Available | Negative | 2326144 - 2327052 | 32944.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




