Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic di-gmp phosphodiesterase | BEN53_RS11640 | Not Available | Positive | 2270996 - 2272981 | 74779.4 |
| protein ymid | BEN53_RS27450 | Not Available | Negative | 2272963 - 2273091 | 5077.28 |
| protein yciz | BEN53_RS11645 | Not Available | Positive | 2273129 - 2273302 | 6441.71 |
| dna-binding transcriptional regulator ycit | BEN53_RS11650 | Not Available | Positive | 2273392 - 2274141 | 27590.2 |
| osmotically-inducible lipoprotein osmb | BEN53_RS11655 | Not Available | Positive | 2274410 - 2274628 | 6962.54 |
| stress response translation initiation inhibitor ycih | BEN53_RS11660 | Not Available | Negative | 2274754 - 2275080 | 11411.0 |
| orotidine-5'-phosphate decarboxylase | BEN53_RS11665 | Not Available | Negative | 2275080 - 2275817 | 26231.6 |
| lipopolysaccharide assembly protein lapb | BEN53_RS11670 | Not Available | Negative | 2276009 - 2277178 | 44533.6 |
| lipopolysaccharide assembly protein lapa | BEN53_RS11675 | Not Available | Negative | 2277185 - 2277493 | 11324.1 |
| phosphatidylglycerophosphatase b | BEN53_RS11680 | Not Available | Negative | 2277642 - 2278406 | 29052.8 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




