Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide abc transporter atp-binding protein sapf | BEN53_RS11585 | Not Available | Positive | 2257886 - 2258692 | 30572.5 |
| multidrug effflux mfs transporter | BEN53_RS11590 | Not Available | Negative | 2258741 - 2259904 | 41368.1 |
| efflux transporter outer membrane subunit | BEN53_RS11595 | Not Available | Negative | 2259913 - 2261286 | 49103.0 |
| efflux rnd transporter permease subunit | BEN53_RS11600 | Not Available | Negative | 2261290 - 2264397 | 111645.0 |
| efflux rnd transporter periplasmic adaptor subunit | BEN53_RS11605 | Not Available | Negative | 2264397 - 2265518 | 39727.0 |
| tetr/acrr family transcriptional regulator | BEN53_RS11610 | Not Available | Negative | 2265667 - 2266233 | 21828.5 |
| enoyl-acp reductase fabi | BEN53_RS11620 | Not Available | Positive | 2266711 - 2267499 | 27865.5 |
| carboxymuconolactone decarboxylase family protein | BEN53_RS11625 | Not Available | Positive | 2267643 - 2268758 | 41578.3 |
| exoribonuclease ii | BEN53_RS11630 | Not Available | Positive | 2268826 - 2270760 | 72466.7 |
| hypothetical protein | BEN53_RS11635 | Not Available | Negative | 2270838 - 2270942 | 4122.21 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




