Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2534 family protein | BEN53_RS11385 | Not Available | Negative | 2216727 - 2216984 | 9339.82 |
| low conductance mechanosensitive channel ynai | BEN53_RS11390 | Not Available | Positive | 2217228 - 2218259 | 38769.9 |
| murein tripeptide abc transporter substrate-binding protein mppa | BEN53_RS11395 | Not Available | Negative | 2218310 - 2219923 | 59933.3 |
| murein tripeptide amidase mpaa | BEN53_RS11400 | Not Available | Positive | 2220106 - 2220834 | 26540.3 |
| l-ala-d/l-glu epimerase | BEN53_RS11405 | Not Available | Negative | 2220809 - 2221774 | 34656.9 |
| thiol peroxidase | BEN53_RS11410 | Not Available | Positive | 2221893 - 2222399 | 17836.3 |
| transcriptional regulator tyrr | BEN53_RS11415 | Not Available | Negative | 2222443 - 2223984 | 57657.5 |
| ycjf family protein | BEN53_RS11420 | Not Available | Negative | 2224132 - 2225193 | 39363.5 |
| ycjx family protein | BEN53_RS11425 | Not Available | Negative | 2225190 - 2226587 | 52611.6 |
| laci family dna-binding transcriptional regulator | BEN53_RS11430 | Not Available | Positive | 2226731 - 2227729 | 36171.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




