Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein ynan | BEN53_RS27445 | Not Available | Negative | 2206313 - 2206360 | 1992.58 |
| diguanylate cyclase dgcm | BEN53_RS11330 | Not Available | Positive | 2206554 - 2207786 | 46453.8 |
| dna endonuclease smra | BEN53_RS11335 | Not Available | Negative | 2207807 - 2208370 | 21541.8 |
| lysr family transcriptional regulator | BEN53_RS11345 | Not Available | Negative | 2208700 - 2209608 | 34075.2 |
| p-aminobenzoyl-glutamate hydrolase subunit abga | BEN53_RS11350 | Not Available | Positive | 2209784 - 2211094 | 46749.1 |
| p-aminobenzoyl-glutamate hydrolase subunit abgb | BEN53_RS11355 | Not Available | Positive | 2211094 - 2212539 | 52223.4 |
| p-aminobenzoyl-glutamate transporter | BEN53_RS11365 | Not Available | Positive | 2212576 - 2214102 | 54871.1 |
| methylated-dna--[protein]-cysteine s-methyltransferase | BEN53_RS11370 | Not Available | Positive | 2214113 - 2214628 | 19208.3 |
| fumarate/nitrate reduction transcriptional regulator fnr | BEN53_RS11375 | Not Available | Positive | 2214823 - 2215575 | 27968.9 |
| universal stress protein uspe | BEN53_RS11380 | Not Available | Positive | 2215727 - 2216677 | 35708.9 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




