Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-lactate dehydrogenase | BEN53_RS11280 | Not Available | Positive | 2194573 - 2195562 | 36536.9 |
| heat shock protein hslj | BEN53_RS11285 | Not Available | Positive | 2195673 - 2196095 | 15166.5 |
| duf333 domain-containing protein | BEN53_RS11290 | Not Available | Negative | 2196092 - 2196358 | 8696.44 |
| pyruvate:ferredoxin (flavodoxin) oxidoreductase | BEN53_RS11295 | Not Available | Positive | 2196632 - 2200156 | 128759.0 |
| porin ompn | BEN53_RS11300 | Not Available | Positive | 2200517 - 2201650 | 41180.9 |
| universal stress protein uspf | BEN53_RS11305 | Not Available | Positive | 2201791 - 2202225 | 15959.4 |
| trna 2-thiocytidine(32) synthetase ttca | BEN53_RS11310 | Not Available | Positive | 2202401 - 2203336 | 35461.8 |
| atp-dependent rna helicase dbpa | BEN53_RS11315 | Not Available | Negative | 2203465 - 2204838 | 49305.9 |
| protein ynal | BEN53_RS27810 | Not Available | Negative | 2204868 - 2205041 | 6427.87 |
| zinc transporter zntb | BEN53_RS11325 | Not Available | Negative | 2205316 - 2206299 | 36614.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




