Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidate cytidylyltransferase | BEN53_RS11230 | Not Available | Negative | 2184974 - 2185870 | 33333.1 |
| cdp-alcohol phosphatidyltransferase family protein | BEN53_RS11235 | Not Available | Negative | 2185870 - 2186475 | 22672.6 |
| duf2773 domain-containing bactofilin | BEN53_RS11240 | Not Available | Negative | 2186646 - 2188952 | 86718.5 |
| pyridoxine 4-dehydrogenase | BEN53_RS11245 | Not Available | Negative | 2189016 - 2189876 | 30757.9 |
| phenylacetic acid degradation protein paay | BEN53_RS11250 | Not Available | Negative | 2190108 - 2190698 | 21365.8 |
| hypothetical protein | BEN53_RS11255 | Not Available | Negative | 2190680 - 2190832 | 5473.55 |
| hypothetical protein | BEN53_RS11260 | Not Available | Positive | 2190833 - 2191039 | 7954.42 |
| ydbl family protein | BEN53_RS11265 | Not Available | Negative | 2191210 - 2191539 | 12055.8 |
| ynbe family lipoprotein | BEN53_RS11270 | Not Available | Negative | 2191544 - 2191729 | 6840.53 |
| ydbh family protein | BEN53_RS11275 | Not Available | Negative | 2191726 - 2194365 | 96952.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




