Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BEN53_RS27440 | Not Available | Negative | 2172151 - 2172219 | 2428.15 |
| hypothetical protein | BEN53_RS11185 | Not Available | Negative | 2172245 - 2172418 | 5764.08 |
| cytochrome b561 | BEN53_RS11190 | Not Available | Negative | 2172663 - 2173193 | 20227.6 |
| type i glyceraldehyde-3-phosphate dehydrogenase | BEN53_RS11195 | Not Available | Positive | 2173382 - 2174383 | 35764.7 |
| aldehyde dehydrogenase | BEN53_RS11200 | Not Available | Negative | 2174424 - 2175863 | 52250.8 |
| duf218 domain-containing protein ydcf | BEN53_RS11205 | Not Available | Negative | 2176060 - 2176860 | 29679.3 |
| atp-dependent rna helicase hrpa | BEN53_RS11210 | Not Available | Negative | 2177133 - 2181035 | 148984.0 |
| fmn-dependent nadh-azoreductase | BEN53_RS11215 | Not Available | Positive | 2181236 - 2181841 | 21658.9 |
| phosphatase pap2/dual specificity phosphatase family protein | BEN53_RS11220 | Not Available | Negative | 2181895 - 2183187 | 49660.5 |
| bifunctional alpha/beta hydrolase/class i sam-dependent methyltransferase | BEN53_RS11225 | Not Available | Negative | 2183201 - 2184958 | 65454.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




