Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dicarboxylate transporter/tellurite-resistance protein teha | BEN53_RS11120 | Not Available | Negative | 2161081 - 2162073 | 35934.5 |
| ydck family protein | BEN53_RS11125 | Not Available | Positive | 2162197 - 2163177 | 35771.2 |
| 50s ribosomal protein l7/l12-serine acetyltransferase | BEN53_RS11130 | Not Available | Negative | 2163169 - 2163708 | 20629.6 |
| ydch family protein | BEN53_RS11135 | Not Available | Negative | 2163771 - 2163995 | 8878.79 |
| glucan biosynthesis protein opgd | BEN53_RS11145 | Not Available | Negative | 2164135 - 2165790 | 62771.2 |
| voc family protein | BEN53_RS11155 | Not Available | Negative | 2166015 - 2167358 | 51091.7 |
| lysr substrate-binding domain-containing protein | BEN53_RS11160 | Not Available | Positive | 2167575 - 2168498 | 33389.6 |
| methyl-accepting chemotaxis protein trg | BEN53_RS11165 | Not Available | Negative | 2168537 - 2170177 | 58886.4 |
| is3-like element is150 family transposase | BEN53_RS11175 | Not Available | Positive | 2170555 - 2171924 | 53057.1 |
| type i toxin-antitoxin system toxin hokb | BEN53_RS11180 | Not Available | Positive | 2172024 - 2172173 | 5626.16 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




