Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gnat family n-acetyltransferase | BEN53_RS11020 | Not Available | Positive | 2144417 - 2144935 | 19275.8 |
| dmt family transporter | BEN53_RS11025 | Not Available | Positive | 2144932 - 2145381 | 15824.0 |
| duf2526 family protein ydcy | BEN53_RS11030 | Not Available | Negative | 2145382 - 2145615 | 8800.41 |
| orphan toxin ortt | BEN53_RS11035 | Not Available | Negative | 2145701 - 2145874 | 6646.44 |
| stress response membrane protein yncl | BEN53_RS11045 | Not Available | Positive | 2146069 - 2146164 | 3490.44 |
| aminobutyraldehyde dehydrogenase | BEN53_RS11050 | Not Available | Negative | 2146261 - 2147685 | 50830.9 |
| abc transporter permease | BEN53_RS11055 | Not Available | Negative | 2147707 - 2148501 | 28723.5 |
| abc transporter permease | BEN53_RS11060 | Not Available | Negative | 2148491 - 2149432 | 34367.1 |
| abc transporter atp-binding protein | BEN53_RS11065 | Not Available | Negative | 2149433 - 2150446 | 37124.9 |
| putative abc transporter substrate-binding protein ydcs | BEN53_RS11070 | Not Available | Negative | 2150464 - 2151609 | 42294.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




