Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stationary-phase-induced ribosome-associated protein | BEN53_RS10855 | Not Available | Positive | 2106615 - 2106752 | 5096.13 |
| malate dehydrogenase | BEN53_RS10860 | Not Available | Positive | 2106909 - 2108606 | 63167.0 |
| alcohol dehydrogenase adhp | BEN53_RS10865 | Not Available | Positive | 2108740 - 2109750 | 35371.6 |
| type ii toxin-antitoxin system rele/pare family toxin | BEN53_RS10870 | Not Available | Positive | 2109936 - 2110214 | 10521.7 |
| higa family addiction module antitoxin | BEN53_RS10875 | Not Available | Positive | 2110214 - 2110498 | 10401.7 |
| formate dehydrogenase-n subunit gamma | BEN53_RS10880 | Not Available | Negative | 2110549 - 2111202 | 25388.0 |
| formate dehydrogenase n subunit beta | BEN53_RS10885 | Not Available | Negative | 2111195 - 2112079 | 32240.4 |
| formate dehydrogenase-n subunit alpha | BEN53_RS10890 | Not Available | Negative | 2112092 - 2115139 | 112765.0 |
| aromatic amino acid efflux dmt transporter yddg | BEN53_RS10895 | Not Available | Positive | 2115371 - 2116252 | 31562.4 |
| porin ompc | BEN53_RS10900 | Not Available | Positive | 2116510 - 2117610 | 40982.4 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




