Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bestrophin family protein | BEN53_RS10655 | Not Available | Positive | 2052373 - 2053287 | 34811.0 |
| trans-aconitate 2-methyltransferase | BEN53_RS10660 | Not Available | Negative | 2053291 - 2054049 | 29034.4 |
| (4s)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase | BEN53_RS10665 | Not Available | Negative | 2054106 - 2054396 | 11239.4 |
| 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | BEN53_RS10670 | Not Available | Negative | 2054420 - 2055295 | 31806.4 |
| autoinducer 2 abc transporter substrate-binding protein lsrb | BEN53_RS10675 | Not Available | Negative | 2055322 - 2056344 | 36728.9 |
| autoinducer 2 abc transporter permease lsrd | BEN53_RS10680 | Not Available | Negative | 2056356 - 2057348 | 34444.6 |
| autoinducer 2 abc transporter permease lsrc | BEN53_RS10685 | Not Available | Negative | 2057348 - 2058376 | 36489.3 |
| autoinducer 2 abc transporter atp-binding protein lsra | BEN53_RS10690 | Not Available | Negative | 2058370 - 2059905 | 55716.7 |
| transcriptional regulator lsrr | BEN53_RS10695 | Not Available | Positive | 2060154 - 2061107 | 33858.1 |
| autoinducer-2 kinase | BEN53_RS10700 | Not Available | Positive | 2061186 - 2062778 | 57632.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




