Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1161 domain-containing protein | BEN53_RS10440 | Not Available | Negative | 2016253 - 2016558 | 10491.3 |
| ynfc family lipoprotein | BEN53_RS10445 | Not Available | Positive | 2016666 - 2017376 | 26533.3 |
| spermidine n1-acetyltransferase | BEN53_RS10450 | Not Available | Negative | 2017379 - 2017939 | 21902.3 |
| duf1283 family protein | BEN53_RS10455 | Not Available | Negative | 2017974 - 2018315 | 12943.4 |
| ynfa family protein | BEN53_RS10460 | Not Available | Positive | 2018450 - 2018776 | 11902.1 |
| starvation-sensing protein rspa | BEN53_RS10470 | Not Available | Positive | 2018982 - 2020196 | 45971.0 |
| zn-dependent oxidoreductase | BEN53_RS10475 | Not Available | Positive | 2020208 - 2021227 | 36565.1 |
| mhs family mfs transporter ydfj | BEN53_RS10480 | Not Available | Positive | 2021285 - 2022652 | 49315.6 |
| mannitol dehydrogenase family protein | BEN53_RS10485 | Not Available | Positive | 2022741 - 2024201 | 53738.4 |
| putative selenium delivery protein ydfz | BEN53_RS10490 | Not Available | Negative | 2024237 - 2024440 | 7276.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




