Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid permease | BEN53_RS10325 | Not Available | Negative | 1993181 - 1994563 | 49504.5 |
| duf1471 family protein ydgh | BEN53_RS10335 | Not Available | Negative | 1994749 - 1995693 | 33874.9 |
| re/si-specific nad(p)(+) transhydrogenase subunit alpha | BEN53_RS10340 | Not Available | Positive | 1996218 - 1997750 | 54596.6 |
| re/si-specific nad(p)(+) transhydrogenase subunit beta | BEN53_RS10345 | Not Available | Positive | 1997761 - 1999149 | 48740.1 |
| ai-2 transporter tqsa | BEN53_RS10350 | Not Available | Negative | 1999174 - 2000208 | 37573.4 |
| multidrug/spermidine efflux smr transporter subunit mdtj | BEN53_RS10360 | Not Available | Positive | 2000620 - 2000985 | 13115.7 |
| multidrug/spermidine efflux smr transporter subunit mdti | BEN53_RS10365 | Not Available | Positive | 2000972 - 2001301 | 11720.8 |
| trypsin-like serine peptidase | BEN53_RS10370 | Not Available | Negative | 2001340 - 2002161 | 29197.5 |
| hypothetical protein | BEN53_RS10375 | Not Available | Negative | 2002261 - 2002344 | 3206.2 |
| acid resistance repetitive basic protein asr | BEN53_RS10380 | Not Available | Negative | 2002437 - 2002745 | 10589.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




