Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hlyd family secretion protein | BEN53_RS10115 | Not Available | Negative | 1952179 - 1953036 | 31497.5 |
| duf1656 domain-containing protein | BEN53_RS10120 | Not Available | Negative | 1953039 - 1953275 | 8891.33 |
| transcriptional regulator slya | BEN53_RS10125 | Not Available | Positive | 1953476 - 1953910 | 16381.1 |
| outer membrane lipoprotein slyb | BEN53_RS10130 | Not Available | Negative | 1953957 - 1954424 | 15602.7 |
| anhydro-n-acetylmuramic acid kinase | BEN53_RS10135 | Not Available | Positive | 1954698 - 1955807 | 39558.8 |
| c-type lysozyme inhibitor | BEN53_RS10140 | Not Available | Positive | 1955905 - 1956234 | 12572.2 |
| pyridoxamine 5'-phosphate oxidase | BEN53_RS10145 | Not Available | Positive | 1956293 - 1956949 | 25546.6 |
| tyrosine--trna ligase | BEN53_RS10150 | Not Available | Positive | 1957078 - 1958352 | 47529.6 |
| pyridoxal kinase pdxy | BEN53_RS10155 | Not Available | Positive | 1958414 - 1959274 | 31218.9 |
| glutathione transferase gsta | BEN53_RS10160 | Not Available | Negative | 1959318 - 1959923 | 22869.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




