Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly atpase sufc | BEN53_RS09915 | Not Available | Positive | 1911790 - 1912536 | 27603.0 |
| fe-s cluster assembly protein sufd | BEN53_RS09920 | Not Available | Positive | 1912511 - 1913782 | 46786.4 |
| cysteine desulfurase sufs | BEN53_RS09925 | Not Available | Positive | 1913779 - 1914999 | 44483.4 |
| cysteine desulfuration protein sufe | BEN53_RS09930 | Not Available | Positive | 1915012 - 1915428 | 15801.2 |
| l,d-transpeptidase ldte | BEN53_RS09935 | Not Available | Positive | 1915577 - 1916581 | 36070.4 |
| murein lipoprotein lpp | BEN53_RS09940 | Not Available | Negative | 1916645 - 1916881 | 8323.95 |
| pyruvate kinase pykf | BEN53_RS09945 | Not Available | Negative | 1917192 - 1918604 | 50732.5 |
| protein ynhh | BEN53_RS27595 | Not Available | Negative | 1918612 - 1918806 | 7582.04 |
| fumarate hydratase fumd | BEN53_RS09950 | Not Available | Positive | 1919161 - 1919370 | 7907.85 |
| ferredoxin-like protein | BEN53_RS09955 | Not Available | Positive | 1919826 - 1920452 | 22368.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




