Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | BEN53_RS09865 | Not Available | Negative | 1900524 - 1901789 | 46078.0 |
| mfs transporter | BEN53_RS09870 | Not Available | Negative | 1902016 - 1903230 | 44597.7 |
| ydil family protein | BEN53_RS09875 | Not Available | Negative | 1903330 - 1903686 | 13847.5 |
| Ncrna_class:antisense_rna | Not Available | Not Available | Positive | 1903822 - 1903929 | Not Available |
| ai-2e family transporter ydik | BEN53_RS09885 | Not Available | Negative | 1904115 - 1905227 | 39867.7 |
| fad-binding and (fe-s)-binding domain-containing protein | BEN53_RS09890 | Not Available | Positive | 1905616 - 1908672 | 113190.0 |
| 1,4-dihydroxy-2-naphthoyl-coa hydrolase | BEN53_RS09895 | Not Available | Positive | 1908669 - 1909079 | 14912.2 |
| ydih family protein | BEN53_RS09900 | Not Available | Positive | 1909179 - 1909367 | 7266.74 |
| fe-s cluster assembly scaffold sufa | BEN53_RS09905 | Not Available | Positive | 1909916 - 1910284 | 13286.8 |
| fe-s cluster assembly protein sufb | BEN53_RS09910 | Not Available | Positive | 1910293 - 1911780 | 54761.1 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




