Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| anti-flhdc factor | BEN53_RS09755 | Not Available | Positive | 1878161 - 1878874 | 27204.8 |
| protein adenylyltransferase selo | BEN53_RS09760 | Not Available | Positive | 1878937 - 1880373 | 54601.4 |
| hemin uptake protein hemp | BEN53_RS09765 | Not Available | Negative | 1880377 - 1880568 | 7131.61 |
| 3-deoxy-7-phosphoheptulonate synthase aroh | BEN53_RS09770 | Not Available | Negative | 1880700 - 1881746 | 38707.3 |
| posphoenolpyruvate synthetase regulatory kinase/phosphorylase ppsr | BEN53_RS09775 | Not Available | Negative | 1881903 - 1882736 | 31212.7 |
| phosphoenolpyruvate synthase | BEN53_RS09785 | Not Available | Positive | 1883068 - 1885446 | 87412.0 |
| anion permease | BEN53_RS09790 | Not Available | Positive | 1885935 - 1887335 | 50745.5 |
| 2-hydroxyacid dehydrogenase | BEN53_RS09795 | Not Available | Positive | 1887371 - 1888330 | 34294.3 |
| yhch/yjgk/yial family protein | BEN53_RS09800 | Not Available | Positive | 1888341 - 1888820 | 18470.2 |
| sdr family oxidoreductase | BEN53_RS09805 | Not Available | Positive | 1888833 - 1889576 | 26559.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




