Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hexitol phosphatase hxpb | BEN53_RS09655 | Not Available | Negative | 1860284 - 1860952 | 24330.7 |
| ynib family protein | BEN53_RS09660 | Not Available | Positive | 1861099 - 1861635 | 20382.3 |
| fructosamine kinase family protein | BEN53_RS09665 | Not Available | Negative | 1861676 - 1862536 | 32460.3 |
| type v toxin-antitoxin system endoribonuclease antitoxin ghos | BEN53_RS09670 | Not Available | Negative | 1862642 - 1862932 | 10851.6 |
| 6-phosphofructokinase ii | BEN53_RS09675 | Not Available | Negative | 1863033 - 1863962 | 32430.9 |
| ydiy family protein | BEN53_RS09680 | Not Available | Positive | 1864249 - 1865007 | 27599.6 |
| small membrane protein ynid | BEN53_RS09685 | Not Available | Negative | 1865060 - 1865167 | 4115.44 |
| type iii secretion system effector espl1 | BEN53_RS09690 | Not Available | Negative | 1865334 - 1867232 | 70826.0 |
| threonine--trna ligase | BEN53_RS09695 | Not Available | Positive | 1867755 - 1869683 | 74018.4 |
| translation initiation factor if-3 | BEN53_RS09700 | Not Available | Positive | 1869687 - 1870229 | 20565.2 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




