Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| clamp-binding protein crfc | BEN53_RS00185 | Not Available | Positive | 32530 - 34758 | 84295.9 |
| diguanylate cyclase regulator rdcb family protein | BEN53_RS00190 | Not Available | Positive | 34755 - 35633 | 32923.7 |
| glycine betaine/l-proline transporter prop | BEN53_RS00195 | Not Available | Positive | 35897 - 37399 | 54881.1 |
| lpxt activity modulator pmrr | BEN53_RS00200 | Not Available | Positive | 37511 - 37600 | 3465.23 |
| two-component system sensor histidine kinase pmrb | BEN53_RS00205 | Not Available | Negative | 37576 - 38676 | 41351.3 |
| two-component system response regulator basr | BEN53_RS00210 | Not Available | Negative | 38677 - 39345 | 25002.3 |
| phosphoethanolamine transferase epta | BEN53_RS00215 | Not Available | Negative | 39342 - 40985 | 61596.5 |
| arginine/agmatine antiporter | BEN53_RS00220 | Not Available | Negative | 41089 - 42426 | 46845.3 |
| dna-binding transcriptional activator adiy | BEN53_RS00225 | Not Available | Negative | 42563 - 43324 | 29022.4 |
| arginine decarboxylase | BEN53_RS00230 | Not Available | Negative | 43660 - 45927 | 84398.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




