Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| stress response small protein yobi | BEN53_RS08915 | Not Available | Positive | 1724068 - 1724133 | 2665.42 |
| holliday junction branch migration protein ruva | BEN53_RS08920 | Not Available | Positive | 1724272 - 1724883 | 22163.1 |
| holliday junction branch migration dna helicase ruvb | BEN53_RS08925 | Not Available | Positive | 1724892 - 1725902 | 37176.0 |
| is110-like element is621 family transposase | BEN53_RS08935 | Not Available | Positive | 1726169 - 1727149 | 36445.1 |
| zinc abc transporter permease subunit znub | BEN53_RS08940 | Not Available | Negative | 1727326 - 1728111 | 27778.5 |
| zinc abc transporter atp-binding protein znuc | BEN53_RS08945 | Not Available | Negative | 1728108 - 1728863 | 27869.3 |
| zinc abc transporter substrate-binding protein znua | BEN53_RS08950 | Not Available | Positive | 1728942 - 1729874 | 33921.3 |
| murein dd-endopeptidase mepm | BEN53_RS08955 | Not Available | Positive | 1729890 - 1731212 | 49060.6 |
| lauroyl-kdo(2)-lipid iv(a) myristoyltransferase | BEN53_RS08960 | Not Available | Positive | 1731332 - 1732303 | 37412.5 |
| pyruvate kinase | BEN53_RS08965 | Not Available | Negative | 1732435 - 1733877 | 51374.3 |
Pathways
1297 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




