Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-allose transporter substrate-binding protein | BEN53_RS00075 | Not Available | Negative | 17158 - 18093 | 32897.7 |
| murr/rpir family transcriptional regulator | BEN53_RS00080 | Not Available | Negative | 18152 - 19042 | 32364.1 |
| bifunctional allose-6-phosphate isomerase/ribose-5-phosphate isomerase rpib | BEN53_RS00090 | Not Available | Positive | 19402 - 19851 | 16046.2 |
| ddrrrql repeat protein yjdp | BEN53_RS00095 | Not Available | Positive | 19920 - 20249 | 13530.4 |
| phosphonate metabolism protein phnp | BEN53_RS00100 | Not Available | Negative | 20284 - 21042 | 27865.3 |
| aminoalkylphosphonate n-acetyltransferase | BEN53_RS00105 | Not Available | Negative | 21044 - 21478 | 16570.8 |
| ribose 1,5-bisphosphokinase | BEN53_RS00110 | Not Available | Negative | 21465 - 22022 | 20683.7 |
| alpha-d-ribose 1-methylphosphonate 5-triphosphate diphosphatase | BEN53_RS00115 | Not Available | Negative | 22022 - 23158 | 42085.0 |
| phosphonate c-p lyase system protein phnl | BEN53_RS00120 | Not Available | Negative | 23155 - 23835 | 24747.1 |
| phosphonate c-p lyase system protein phnk | BEN53_RS00125 | Not Available | Negative | 23946 - 24704 | 27837.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




