Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrogen assimilation transcriptional regulator nac | BEN53_RS08020 | Not Available | Positive | 1560840 - 1561757 | 32868.1 |
| hth-type transcriptional regulator cbl | BEN53_RS08025 | Not Available | Positive | 1561859 - 1562809 | 35874.1 |
| hypothetical protein | BEN53_RS08035 | Not Available | Negative | 1563076 - 1564740 | 64573.2 |
| hypothetical protein | BEN53_RS08040 | Not Available | Negative | 1565094 - 1566229 | 41963.8 |
| duf4225 domain-containing protein | BEN53_RS08045 | Not Available | Negative | 1566877 - 1567710 | 32448.9 |
| isas1-like element isec1 family transposase | BEN53_RS08050 | Not Available | Negative | 1567880 - 1569016 | 43073.9 |
| imm11 family protein | BEN53_RS08060 | Not Available | Negative | 1569644 - 1570201 | 21624.0 |
| rhs repeat-associated core domain-containing protein | BEN53_RS08065 | Not Available | Negative | 1570214 - 1571746 | 59071.3 |
| hypothetical protein | BEN53_RS08070 | Not Available | Negative | 1571970 - 1572497 | 20849.6 |
| rhs repeat domain-containing protein | BEN53_RS27580 | Not Available | Negative | 1572494 - 1573576 | 40333.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




