Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2169 domain-containing protein | BEN53_RS07970 | Not Available | Positive | 1550941 - 1551276 | 12364.8 |
| is3 family transposase | BEN53_RS07975 | Not Available | Negative | 1551280 - 1552457 | 45771.6 |
| rhs repeat-associated core domain-containing protein | BEN53_RS07980 | Not Available | Positive | 1552641 - 1556729 | 155325.0 |
| hypothetical protein | BEN53_RS07985 | Not Available | Positive | 1556740 - 1557081 | 13004.5 |
| rhs repeat-associated core domain-containing protein | BEN53_RS27795 | Not Available | Positive | 1557225 - 1557839 | 23190.9 |
| hypothetical protein | BEN53_RS07995 | Not Available | Positive | 1557842 - 1558135 | 11542.2 |
| addiction module antidote protein | BEN53_RS08000 | Not Available | Negative | 1558258 - 1558566 | 11085.2 |
| type ii toxin-antitoxin system rele/pare family toxin | BEN53_RS08005 | Not Available | Negative | 1558570 - 1558887 | 12017.5 |
| tyrosine-type recombinase/integrase | BEN53_RS08010 | Not Available | Negative | 1559011 - 1560273 | 48886.9 |
| Trna-asn | Not Available | Not Available | Positive | 1560440 - 1560515 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




