Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp phosphoribosyltransferase | BEN53_RS07720 | Not Available | Negative | 1509929 - 1510828 | 33354.8 |
| his operon leader peptide | BEN53_RS07730 | Not Available | Negative | 1510974 - 1511024 | 2081.43 |
| sdr family oxidoreductase | BEN53_RS07735 | Not Available | Positive | 1511451 - 1512275 | 29681.7 |
| lysr substrate-binding domain-containing protein | BEN53_RS07740 | Not Available | Positive | 1512321 - 1513250 | 34171.9 |
| membrane protein yoei | BEN53_RS07745 | Not Available | Positive | 1513465 - 1513527 | 2241.66 |
| putrescine/proton symporter plap | BEN53_RS07750 | Not Available | Positive | 1513517 - 1514875 | 49540.5 |
| thiosulfate utilization transporter tsua/yeee | BEN53_RS07755 | Not Available | Positive | 1515054 - 1516112 | 38060.7 |
| thiosulfate utilization sulfurtransferase tsub/yeed | BEN53_RS07760 | Not Available | Positive | 1516126 - 1516353 | 8122.64 |
| exodeoxyribonuclease i | BEN53_RS07765 | Not Available | Negative | 1516396 - 1517823 | 54458.6 |
| serine-type d-ala-d-ala carboxypeptidase dacd | BEN53_RS07770 | Not Available | Positive | 1518032 - 1519198 | 43304.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




