Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-dependent phosphogluconate dehydrogenase | BEN53_RS07670 | Not Available | Positive | 1499663 - 1501069 | 51484.1 |
| udp-glucose 6-dehydrogenase | BEN53_RS07675 | Not Available | Positive | 1501317 - 1502483 | 43629.2 |
| lps o-antigen chain length determinant protein wzzb | BEN53_RS07680 | Not Available | Positive | 1502629 - 1503609 | 36367.8 |
| bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisie | BEN53_RS07685 | Not Available | Negative | 1503795 - 1504406 | 22815.1 |
| imidazole glycerol phosphate synthase subunit hisf | BEN53_RS07690 | Not Available | Negative | 1504400 - 1505176 | 28457.0 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | BEN53_RS07695 | Not Available | Negative | 1505158 - 1505895 | 26059.2 |
| imidazole glycerol phosphate synthase subunit hish | BEN53_RS07700 | Not Available | Negative | 1505895 - 1506485 | 21654.1 |
| bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisb | BEN53_RS07705 | Not Available | Negative | 1506485 - 1507552 | 40323.4 |
| histidinol-phosphate transaminase | BEN53_RS07710 | Not Available | Negative | 1507552 - 1508622 | 39406.3 |
| histidinol dehydrogenase | BEN53_RS07715 | Not Available | Negative | 1508619 - 1509923 | 46252.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




