Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BEN53_RS06575 | Not Available | Positive | 1267896 - 1268336 | 16313.3 |
| type ii toxin-antitoxin system mrna interferase toxin, rele/stbe family | BEN53_RS06580 | Not Available | Positive | 1268336 - 1268617 | 10664.8 |
| atp-dependent dna helicase ding | BEN53_RS06590 | Not Available | Positive | 1268788 - 1270938 | 81444.9 |
| dna-binding protein ybib | BEN53_RS06595 | Not Available | Positive | 1270966 - 1271928 | 35108.7 |
| hydroxycarboxylate dehydrogenase hcxb | BEN53_RS06600 | Not Available | Positive | 1272069 - 1273154 | 38885.3 |
| protein ybie | BEN53_RS27420 | Not Available | Positive | 1273221 - 1273280 | 2006.37 |
| duf1471 family protein ybij | BEN53_RS06605 | Not Available | Negative | 1273294 - 1273554 | 8568.2 |
| c4-type zinc finger protein ybii | BEN53_RS06610 | Not Available | Negative | 1273819 - 1274085 | 9785.37 |
| pkhd-type hydroxylase ybix | BEN53_RS06615 | Not Available | Negative | 1274159 - 1274836 | 25512.2 |
| catecholate siderophore receptor fiu | BEN53_RS06620 | Not Available | Negative | 1274878 - 1277160 | 81902.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




