Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxoglutarate dehydrogenase e1 component | BEN53_RS06100 | Not Available | Positive | 1176875 - 1179676 | 105068.0 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | BEN53_RS06105 | Not Available | Positive | 1179691 - 1180908 | 44014.0 |
| adp-forming succinate--coa ligase subunit beta | BEN53_RS06110 | Not Available | Positive | 1181002 - 1182168 | 41395.1 |
| succinate--coa ligase subunit alpha | BEN53_RS06115 | Not Available | Positive | 1182168 - 1183037 | 29779.3 |
| rtcb family protein | BEN53_RS06120 | Not Available | Negative | 1183136 - 1184533 | 51237.6 |
| urocanate hydratase | BEN53_RS06125 | Not Available | Positive | 1185291 - 1186988 | 62186.1 |
| cytosine permease | BEN53_RS06130 | Not Available | Positive | 1187152 - 1188561 | 49981.7 |
| hutd family protein | BEN53_RS06135 | Not Available | Positive | 1188572 - 1189153 | 21421.0 |
| imidazolonepropionase | BEN53_RS06140 | Not Available | Positive | 1189150 - 1190361 | 43887.7 |
| formimidoylglutamase | BEN53_RS06145 | Not Available | Positive | 1190361 - 1191311 | 34224.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




