Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uxaa family hydrolase | BEN53_RS06050 | Not Available | Positive | 1167384 - 1168580 | 43166.3 |
| c4-dicarboxylate trap transporter substrate-binding protein | BEN53_RS06055 | Not Available | Positive | 1168608 - 1169576 | 36202.0 |
| trap transporter small permease | BEN53_RS06060 | Not Available | Positive | 1169636 - 1170097 | 17075.8 |
| trap transporter large permease | BEN53_RS06065 | Not Available | Positive | 1170097 - 1171407 | 46735.0 |
| citrate synthase | BEN53_RS06070 | Not Available | Negative | 1171454 - 1172737 | 47931.6 |
| hypothetical protein | BEN53_RS27095 | Not Available | Negative | 1172943 - 1173050 | 3827.66 |
| succinate dehydrogenase cytochrome b556 subunit | BEN53_RS06080 | Not Available | Positive | 1173431 - 1173835 | 14934.9 |
| succinate dehydrogenase membrane anchor subunit | BEN53_RS06085 | Not Available | Positive | 1173829 - 1174176 | 12868.3 |
| succinate dehydrogenase flavoprotein subunit | BEN53_RS06090 | Not Available | Positive | 1174176 - 1175942 | 64425.6 |
| succinate dehydrogenase iron-sulfur subunit sdhb | BEN53_RS06095 | Not Available | Positive | 1175958 - 1176674 | 26785.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




