Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system sensor histidine kinase kdpd | BEN53_RS05950 | Not Available | Negative | 1147050 - 1149734 | 98709.1 |
| k(+)-transporting atpase subunit c | BEN53_RS05955 | Not Available | Negative | 1149727 - 1150299 | 20275.2 |
| potassium-transporting atpase subunit kdpb | BEN53_RS05960 | Not Available | Negative | 1150308 - 1152356 | 72269.5 |
| potassium-transporting atpase subunit kdpa | BEN53_RS05965 | Not Available | Negative | 1152379 - 1154052 | 58979.4 |
| k(+)-transporting atpase subunit f | BEN53_RS05970 | Not Available | Negative | 1154052 - 1154141 | 3041.92 |
| ybfa family protein | BEN53_RS05975 | Not Available | Positive | 1154454 - 1154660 | 8275.0 |
| ybga family protein | BEN53_RS05980 | Not Available | Positive | 1154761 - 1155270 | 20108.1 |
| deoxyribodipyrimidine photo-lyase | BEN53_RS05985 | Not Available | Positive | 1155267 - 1156685 | 53805.0 |
| dipeptide permease dtpd | BEN53_RS05990 | Not Available | Negative | 1156728 - 1158209 | 54120.1 |
| radiation resistance protein ybgi | BEN53_RS05995 | Not Available | Positive | 1158480 - 1159223 | 26880.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




