Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf493 family protein ybed | BEN53_RS05640 | Not Available | Negative | 1088309 - 1088572 | 9827.92 |
| d-alanyl-d-alanine carboxypeptidase daca | BEN53_RS05645 | Not Available | Negative | 1088682 - 1089893 | 44446.5 |
| endolytic peptidoglycan transglycosylase rlpa | BEN53_RS05650 | Not Available | Negative | 1090033 - 1091121 | 37502.0 |
| peptidoglycan glycosyltransferase mrdb | BEN53_RS05655 | Not Available | Negative | 1091132 - 1092244 | 40492.6 |
| peptidoglycan dd-transpeptidase mrda | BEN53_RS05660 | Not Available | Negative | 1092247 - 1094148 | 70860.6 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | BEN53_RS05665 | Not Available | Negative | 1094179 - 1094646 | 17342.1 |
| ribosome silencing factor | BEN53_RS05670 | Not Available | Negative | 1094650 - 1094967 | 11582.9 |
| adenosylcobalamin/alpha-ribazole phosphatase | BEN53_RS05675 | Not Available | Negative | 1095227 - 1095838 | 23440.9 |
| nicotinate-nucleotide adenylyltransferase | BEN53_RS05680 | Not Available | Negative | 1095862 - 1096503 | 24529.3 |
| dna polymerase iii subunit delta | BEN53_RS05685 | Not Available | Negative | 1096505 - 1097536 | 38678.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




