Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component response regulator dpia | BEN53_RS05575 | Not Available | Positive | 1079787 - 1080467 | 25454.9 |
| anaerobic c4-dicarboxylate transporter dcuc | BEN53_RS05580 | Not Available | Negative | 1080508 - 1081893 | 48415.3 |
| lipid iv(a) palmitoyltransferase pagp | BEN53_RS05590 | Not Available | Positive | 1082482 - 1083042 | 21847.7 |
| transcription antiterminator/rna stability regulator cspe | BEN53_RS05595 | Not Available | Positive | 1083217 - 1083426 | 7463.84 |
| fluoride efflux transporter crcb | BEN53_RS05600 | Not Available | Negative | 1083480 - 1083863 | 13766.1 |
| deaminated glutathione amidase | BEN53_RS05605 | Not Available | Positive | 1083959 - 1084747 | 28664.0 |
| twin-arginine translocase subunit tate | BEN53_RS05610 | Not Available | Positive | 1084876 - 1085079 | 7024.71 |
| lipoyl synthase | BEN53_RS05615 | Not Available | Negative | 1085180 - 1086145 | 36073.8 |
| ybef family transcriptional regulator | BEN53_RS05625 | Not Available | Negative | 1086354 - 1087307 | 35867.4 |
| lipoyl(octanoyl) transferase lipb | BEN53_RS05635 | Not Available | Negative | 1087567 - 1088208 | 23898.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




