Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 2016C-3878 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Genome Summary
Escherichia coli strain 2016C-3878 chromosome, complete genome.
Gene Summary
Adenine Count
1237340 bp
Thymine Count
1237176 bp
Guanine Count
1258646 bp
Cytosine Count
1262294 bp
Genome Length
4995456 bp
Protein-coding Genes
4569 genes
Non-Coding Genes
250 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ribosome-associated protein ybcj | BEN53_RS04865 | Not Available | Negative | 958428 - 958640 | 7389.95 |
| bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase fold | BEN53_RS04870 | Not Available | Negative | 958642 - 959508 | 30957.5 |
| type 1 fimbrial major subunit fima | BEN53_RS04875 | Not Available | Positive | 959980 - 960522 | 18475.5 |
| type 1 fimbria chaperone fimc | BEN53_RS04880 | Not Available | Positive | 960741 - 961433 | 25489.2 |
| fimbrial biogenesis usher protein | BEN53_RS04885 | Not Available | Positive | 961464 - 964073 | 96029.6 |
| type 1 fimbria d-mannose specific adhesin fimh | BEN53_RS04890 | Not Available | Positive | 964086 - 965093 | 36692.1 |
| fimbria assembly protein | BEN53_RS04895 | Not Available | Positive | 965104 - 965619 | 18143.5 |
| fimbria biosynthesis transcriptional regulator fimz | BEN53_RS04900 | Not Available | Negative | 965622 - 966254 | 23691.9 |
| Trna-arg | Not Available | Not Available | Positive | 966496 - 966572 | Not Available |
| hypothetical protein | BEN53_RS27875 | Not Available | Positive | 1010917 - 1011054 | 5261.65 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |




