Escherichia coli strain 2016C-3878

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 2016C-3878 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at 37.0°C, which reflects the temperature of the human body, suggesting a potential association with warm-blooded hosts. E. coli 2016C-3878 is classified as a facultative anaerobe, indicating its ability to grow in both the presence and absence of oxygen, allowing it to adapt to varying microenvironments within host-associated habitats. The host-associated habitat of this strain suggests a role in the microbiota of its host, contributing to various biological functions, including digestion and the synthesis of essential vitamins. The flexibility in oxygen requirements may enable E. coli 2016C-3878 to occupy diverse niches within the gastrointestinal tract, where oxygen levels can fluctuate. Furthermore, the ability to exist in pairs may be advantageous for communication and resource sharing among cells, potentially enhancing its survival and adaptability in complex microbial communities. Understanding the specific traits of E. coli strain 2016C-3878 provides insight into its potential functional roles in host-associated ecosystems, highlighting the importance of microbial diversity in maintaining host health and homeostasis.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 2016C-3878

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 2016C-3878
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli strain 2016C-3878


Gene Summary

Adenine Count

1237340 bp

Thymine Count

1237176 bp

Guanine Count

1258646 bp

Cytosine Count

1262294 bp

Genome Length

4995456 bp

Protein-coding Genes

4569 genes

Non-Coding Genes

250 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+966528 - 966574Not Available
IntegraseBEN53_RS04910Not Available-966588 - 96775145039.5
ExcisionaseBEN53_RS27550Not Available-967914 - 9679782593.11
Hypothetical proteinBEN53_RS04920Not Available-967950 - 96822810925.2
Hypothetical proteinBEN53_RS04925Not Available-968276 - 9684948230.79
Hypothetical proteinBEN53_RS04930Not Available-968593 - 9688088095.86
Dna n-6-adenine-methyltransferaseBEN53_RS04935Not Available-968885 - 96944220575.4
Hypothetical proteinBEN53_RS04940Not Available-969439 - 9695975873.19
ExonucleaseBEN53_RS04945Not Available-969594 - 97027425930.9
Recombination protein betBEN53_RS04950Not Available-970271 - 97105629701.2

Displaying genes 1 – 10 of 5123 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites