Escherichia coli strain SD134209

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SD134209 is a Gram-negative, rod-shaped bacterium characterized by its mobility and the presence of flagella. This strain is classified as a facultative anaerobe, indicating its ability to thrive in both aerobic and anaerobic environments. It typically resides in host-associated habitats, where it can be found in pairs or as single cells. The optimal growth temperature for this mesophilic organism is 37°C. Strain SD134209 is notable for its extensive range of hosts, which includes Homo sapiens, various livestock such as Bos taurus and Sus scrofa, as well as numerous other vertebrates and invertebrates, including Acanthamoeba and Apis mellifera. This diverse host range highlights its adaptability and potential ecological significance. The strain is associated with a variety of health impacts, particularly in humans, where it is known to cause urinary tract infections (UTIs), gastrointestinal infections, and more severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). These health effects underscore the strain's pathogenicity and its potential to contribute to foodborne illnesses and nosocomial infections. The presence of strain SD134209 in multiple hosts suggests a complex interaction within ecosystems, where it may play roles in both health and disease. Its pathogenic capabilities, particularly in human hosts, emphasize the need for continued surveillance and research to understand its behavior in different environments and its implications for public health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SD134209

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SD134209
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SD134209


Gene Summary

Adenine Count

51296 bp

Thymine Count

49871 bp

Guanine Count

44399 bp

Cytosine Count

42776 bp

Genome Length

188342 bp

Protein-coding Genes

203 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDL800_RS00310Not AvailablePositive60259 - 6116734737.0
hypothetical proteinDL800_RS00315Not AvailablePositive61130 - 6144712096.5
tyrosine-type recombinase/integraseDL800_RS00320Not AvailableNegative61472 - 6265344896.9
hha/ymoa family nucleoid-associated regulatory proteinDL800_RS00325Not AvailablePositive62868 - 630808120.89
ig-like domain repeat proteinDL800_RS30810Not AvailablePositive63387 - 6408323917.3
replication initiation protein repeDL800_RS00355Not AvailablePositive64665 - 6542029379.2
is1 family transposaseDL800_RS00365Not AvailablePositive65798 - 6649526595.3
hypothetical proteinDL800_RS00370Not AvailablePositive66905 - 6797840317.5
hypothetical proteinDL800_RS00380Not AvailableNegative68235 - 6871117999.1
hypothetical proteinDL800_RS00390Not AvailablePositive69381 - 6977314734.1

Displaying genes 61 – 70 of 203 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total